Publications

How (and when) should I credit CBID CoBRE in my publications?

 

  1. De Coen R, Nuhn L, Perera C, Arista-Romero M, Risseeuw MDP, Freyn A, Nachbagauer R, Albertazzi L, Van Calenbergh S, Spiegel DA, Peterson BR, De Geest BG. Synthetic Rhamnose Glycopolymer Cell-Surface Receptor for Endogenous Antibody Recruitment. Biomacromolecules Jan 8 2020, 21(2):793-802. PMC31829561. Online access to the article.
  2. Soules KR, Dmitriev A, LaBrie SD, Dimond ZE, May BH, Johnson DK, Zhang Y, Battaile KP, Lovell S, Hefty PS. Structural and ligand binding analyses of the periplasmic sensor domain of RsbU in Chlamydia trachomatis support a role in TCA cycle regulation. Mol Microbiol. Jan 2020, 113(1):68-88. PMC7007330. Online access to the article.
  3. Grunewald ME, Shaban MG, Mackin SR, Fehr AR, Perlman S. Murine coronavirus infection activates AhR in an IDO1-independent manner contributing to cytokine modulation and pro-viral TiPARP expression. J Virol. Feb 2020, 94(3):e01743-19. PMC7000979. Online access to the article.
  4. Fehr AR. Bacterial Artificial Chromosome-Based Lambda Red Recombination with the I-SceI Homing Endonuclease for Genetic Alteration of MERS-CoV. Methods Mol. Bio. 2020, 2099:53-68. PMID31883087. Online access to the article.
  5. Benomar S, Bender AM, Peterson BR, Chandler JR, Ackley BD. The C. elegans CHP1 homolog, pbo-1, functions in innate immunity by regulating the pH of the intestinal lumen. PLoS Pathogens Jan 9 2020, 16(1):e1008134. PMC6952083. Online access to the article.
  6. Fehr AR, Singh SA, Kerr CM, Mukai S, Higashi H, Aikawa, M. The impact of PARPs and ADP-ribosylation on inflammation and host-pathogen interactions. Genes Dev. Feb 6 2020. PMID32029454 Online access to the article.
  7. Greenberg EP, Chandler JR, Seyedsayamdost, MR. The chemistry and biology of bactobolin: a 10-year collaboration with natural product chemist extraordinaire Jon Clardy. J Nat Prod. 2020. PMCID in progress. Online access to the article.
  8. Kurland M, O'Meara B; Tucker DK, Ackley BD. The Hox Gene egl-5 Acts as a Terminal Selector for VD13 Development via Wnt Signaling. J Dev. Biol. March 2020, 8(1):5. PMCID in progress Online access to the article.

2019

  1. Dogrammatzis, C; Deschamps, T; Kalamvoki, M. Biogenesis of extracellular vesicles during herpes simplex virus type 1 infection: The role of the CD63 tetraspanin. J. Virol. Jan 2019, 93(2):e01850-18. PMC6321934. Online access to the article.
  2. Lin, Y; Wang, Y; Chen, Y; Li, H; Qiao, W; Xie, Z; Tan, J; Yang, Z. Simultaneous and systematic analysis of cellular and viral gene expression during Enterovirus 71-induced host shutoff. Protein Cell. Jan 2019, 10(1):72-77. PMC6321815. Online access to the article.
  3. Roy, A; McDonald, P; Timmermann, BN; Gupta, M; Chaguturu, R. Bioactivity Profiling of Plant Biodiversity of Panama by High Throughput Screening. Nat Prod Commun. Jan 2019, 14(1):71-74. PMC6959481. Online access to the article.
  4. Roy, A. Challenges with risk mitigation in academic drug discovery: finding the best solution. Expert Opin Drug Discov. Feb 2019, 14(2):95-100. PMC6467222. Online access to the article.
  5. Grunewald, ME; Chen, Y; Kuny, C; Maejima, T; Lease, R; Ferraris, D; Aikawa, M; Sullivan, CS; Perlman, S; Fehr, AR. The coronavirus macrodomain is required to prevent PARP-mediated inhibition of virus replication and enhancement of IFN expression. PLoS Pathog. May 2019, 15(5):e1007756. PMC6521996. Online access to the article.
  6. Austin, CM; Garabaglu, S; Krute, CN; Ridder, MJ; Seawell, NA; Markiewicz, MA; Boyd, JM; Bose, JL. Contribution of YjblH to Virulence Factor Expression and Host Colonization in Staphylococcus aureus. Infect Immun. May 2019, 87(6):e00155-19. PMC6529663. Online access to the article.
  7. Deschamps, T; Waisner, H; Dogrammatzis, C; Roy, A; Chacko, S; Perera, C; Prisinzano, TE; Kalamvoki, M. Discovery of Small-Molecule Inhibitors Targeting the E3 Ubiquitin Ligase Activity of the Herpes Simplex Virus 1 ICP0 Protein Using an In Vitro High-Throughput Screening Assay. J Virol. Jun 2019, 93(13):619-19. PMC6580980. Online access to the article.
  8. Ngwaga, T; Hydock, AJ; Ganesan, S; Shames, SR. Potentiation of Cytokine-Mediated Restriction of Legionella intracellular Replication by a Dot/Icm-Translocated Effector. J Bacteriol. Jun 2019, 201(14):e00755-18. PMC6597390. Online access to the article.
  9. Knewtson, KE; Perera, C; Hymel, D; Gao, Z; Lee, MM; Peterson, BR. Antibody-Drug Conjugate that Exhibits Synergistic Cytotoxicity with an Endosome-Disruptive Peptide. ACS Omega Jul 312019, 4(7):12955-12968. PMC6690568. Online access to the article.
  10. LaBrie, SD; Dimond, ZE; Harrison, KS; Baid, S; Wickstrum, J; Suchland, RJ; Hefty, PS. Transposon Mutagenesis in Chlamydia trachomatis identifies CT339 as a ComEC Homolog Important for DNA Uptake and Lateral Gene Transfer. mBiol. Jul-Aug 2019, 10(4):e01343-19. PMC6686042. Online access to the article.
  11. Waisner, H; Kalamvoki, M. The ICP0 protein of herpes simplex virus 1 (HSV-1) down-regulates major autophagy adaptor proteins, sequestosome 1 (SQSTM1/p62) and optineurin (OPTN), during the early stages of HSV-1 infection. J Virol. Aug 2 2019, epub ahead of print. PMC6803258. Online access to the article.
  12. Channappanavar, R; Fehr, AR; Zheng, J; Wohlford-Lenane, C; Abrahante, JE; Mack, M; Sompallae, R; McCray Jr., PB; Meyerholz, DK; Perlman, S. IFN-I response timing relative to virus replication determines MERS coronavirus infection outcomes. J Clin Invest. Sep 3 2019, 129(9):3625-3639. PMC6715373. Online access to the article.
  13. Slinger, BL; Deah, JJ; Chandler, JR, Blackwell, HE. Potent modulation of the CepR quorum sensing receptor and virulence in a Burkholderia cepacia complex member using non-native lactone ligands. Sci.Reports 2019, 9(1):13449. PMC6748986. Online access to the article.
  14. Suchland, RJ; Carrell, SJ; Wang, Y; Hybiske, K; Kim, DB; Dimond, ZE; Hefty, PS; Rockey, DD. Chromosomal Recombination Targets in Chlamydia Interspecies Lateral Gene Transfer. J Bacteriol Dec 12019, 201(23): e00365-19. PMC6832074. Online access to the article.
  15. Wang, Y; LaBrie, SD; Carrell, SJ; Suchland, RJ; Dimond, ZE; Kwong, F; Rockey, DD; Hefty, PS; Hybiske, K. Development of Transposon Mutagenesis for Chlamydia muridarum. J Bacteriol Dec 12019, 201(23): e00366-19. PMC6832074. Online access to the article.

2018

  1. Polpitiya Arachchige, S; Henke, W; Pramanik, A; Kalamvoki, M; Stephens, EB. Analysis of Select Herpes Simplex Virus 1 (HSV-1) Proteins for Restriction of Human Immunodeficiency Virus Type 1 (HIV-1): HSV-1 gM Protein Potently Restricts HIV-1 by Preventing Intracellular Transport and Processing of Env gp160. J Virol. Jan 15 2018, 92:2. PMC5752927. Online access to the article.
  2. Evans, KC; Benomar, S; Camuy-Velez, LA; Nasseri, EB; Wang, X; Neuenswander, B; Chandler, JR. Quorum-sensing control of antibiotic resistance stablizes cooperation in Chromobacterium violaceum. The ISME Journal Jan 26 2018, 12:1263-1272. PMC5932061. Online access to the article.
  3. Roy, A. Early Probe and Drug Discovery in Academia: A Minireview. High Throughput Feb 9 2018, 7(1):4. PMC5876530. Online access to the article.
  4. Kfoury, N; Sun, T; Yu, K; Rockwell, N; Tinkum, KL; Qi, Z; Warrington, NM; McDonald, P; Roy, A; Weir, SJ; Mohila, CA; Deneen, B; Rubin, JB. Cooperative p16 and p21 action protects female astrocytes from transformation. Acta Neuropathol Commun Feb 20 2018, 6(1):12. PMC5819173. Online access to the article.
  5. Girinathan, BP; Ou, J; Durpuy, B; Govind R. Pleiotropic roles of Clostridium difficile sin locus. PLoS Pathogens Mar 2018, 14(3):e1006940. PMC5864091. Online access to the article.
  6. Parrales, A; McDonald, P; Ottomeyer, M; Roy, A; Schoenen, FJ; Broward, M; Bruns, T; Thamm, DH; Weir, SJ; Neville, KA; Iwakuma, T; Fulbright, JM. Comparative oncology approach to drug repurposing in osteosarcoma. PLoS One Mar 2018, 26;13(3)e0194224. PMC5868798. Online access to the article.
  7. Klaus JR; Deay J; Neuenswander B; Hursh W; Gao Z; Bouddhara T; Williams TD; Douglas J; Monize K; Martins P; Majerczyk C; Seyedsayamdost MR; Peterson BR; Rivera M; Chandler JR. Malleilactone is a Burkholderia pseudomallei virulence factor regulated by antibiotics and quorum sensing. J Bacteriol. May 7 2018, 200:e00008-18. PMC6018353. Online access to the article.
  8. Franklin, MW; Slusky, JSG. Tight Turns of Outer Membrane Proteins: An Analysis of Sequence, Structure, and Hydrogen Bonding. J. Mol. Biol. Sept 2018, 430(18B):3251-3265. PMC6110081. Online access to the article.
  9. Mori-Quiroz, LM; Hedrick, SL; De Los Santos, AR; Clift, MD. A Unified Strategy for the Syntheses of the Isoquinolinium Alkaloids Berberine, Coptisine, and Jatrorrhizine. Org. Lett. June 28 2018, 20(14):4281-4284. NIHMS1012955. Online access to the article.
  10. Deschamps, T; Kalamvoki, M. Extracellular vesicles released by herpes simplex virus 1 infected cells block virus replication in recipient cells in a STING-dependent manner. J. Virol. Aug 2018, 92(18):e01102-18. PMC6146713. Online access to the article.
  11. Franklin, MW; Nepomnyachiy, S; Feehan, R; Ben-Tal, N; Kolodny, R; Slusky, JSG. Efflux Pumps Represent Possible Evolutionary convergence onto the β-Barrel Fold. Structure Sept 4 2018, 26(9):1266-1274.e2. PMC6125174. Online access to the article.
  12. Vaidya, A; Roy, A; Chaguturu, R. How to rekindle drug discovery process through integrative therapeutic targeting? Expert Opin Drug Discov, Oct 2018, 13(10):893-898. NIHMS1013993. Online access to the article.
  13. El Qaidi, S; Zhu, C; McDonald, P; Roy, A; Maity, PK; Rane, D; Perera, C; Hardwidge, PR.  High-throughput screening for bacterial glycosyltransferase inhibitors. Front Cell Infect Microbiol 2018, 8:435. PMC6305410. Online access to the article.

2017

  1. Girinathan, BP; Monot, M; Boyle, D; McAllister, KN; Sorg, JA; Dupuy, B;  Govind, REffect of tcdR Mutation on Sporulation in the Epidemic Clostridium difficile Strain R20291.  mSphere Feb 2017, 2(1):e00383-16. PMC5311115. Online access to the article.
  2. Dai, A; Cao, S; Dhungel, P; Luan, Y; Liu, Y; Xie, Z; Yang, Z. Ribosome Profiling Reveals Translational Upregulation of Cellular Oxidative Phosphorylation mRNAs during Vaccinia Virus-Induced Host Shutoff. Journal of Virology Mar 2017, 14:91(5):pii:JVI.00071-17. PMC5309933. Online access to the article.
  3. Deschamps, T; Kalamvoki, M. Impaired STING Pathway in Human Osteosarcoma U2OS Cells Contributes to the Growth of ICP0-Null Mutant Herpes Simplex Virus. Journal of Virology Apr 2017, 13:91(9):pii:e00006-17. PMC5391473. Online access to the article.
  4. Deschamps, T; Dogrammatzis, C; Mullick, R; Kalamvoki, M. Cbl E3 Ligase Mediates the Removal of Nectin-1 from the Surface of Herpes Simplex Virus 1-Infected Cells. Journal of Virology May 2017, 26:91(12):pii:e00393-17. PMC5446655. Online access to the article.
  5. Deschamps, T; Kalamvoki, M. Evasion of the STING DNA-sensing Pathway by VP11/12 of Herpes Simplex Virus 1. Journal of Virology Jul 2017, 27:91(16):pii:e00535-17. PMC5533902. Online access to the article.
  6. Roy, A; Mir, MA. Development of High-Throughput Screening Assay for Antihantaviral Therapeutics. SLAS Discov. Jul 2017, 22(6):767-774. PMC5854180. Online access to the article.
  7. Cao, S; Dhungel, P; Yang, Z. Going against the Tide: Selective Cellular Protein Synthesis during Virally Induced Host Shutoff. J Virol. Aug 2017, 10:91(17). PMC5553178. Online access to the article.
  8. Dhungel, P; Cao, S; Yang, Z. The 5'-poly(A) leader of poxvirus mRNA confers a translational advantage that can be achieved in cells with impaired cap-dependent translation. PLoS Pathog. Aug 2017, 13(8):e1006602. PMC5595341. Online access to the article.
  9. Komiya, T; Yamamoto, S; Roy, A; McDonald, P; Perez RP. Drug screening to target nuclear orphan receptor NR4A2 for cancer therapeutics. Transl Lung Cancer Res. Oct 2017, 6(5):600-610. PMC5653521. Online access to the article.
  10. Cao, S; Realegeno, S; Pant, A; Satheshkumar, PS; Yang, Z. Suppression of poxvirus replication by resveratrol. Front Microbiol. Nov 2017, 17(8):2196. PMC5698801. Online access to the article.

2016

  1. Valasani, KR; Sun, Q; Fang, D; Zhang, Z; Yu, Q; Guo, Y; Li, J; Roy, A; ShiDu Yan, S. Identification of a Small Molecule Cyclophilin D Inhibitor for Rescuing Aβ-Mediated Mitochondrial Dysfunction. ACS Medicinal Chemistry Letters Jan 2016, 6:7(3):294-9. PMC4789676. Online access to the article.
  2. Gowthaman, R; Miller, SA; Rogers, S; Khowsathit, J; Lan, L; Bai, N; Johnson, DK; Liu, C; Xu, L; Anbanandam, A; Aubé, J; Roy, A; Karanicolas, J. DARC: Mapping Surface Topography by Ray-Casting for Effective Virtual Screening at Protein Interaction Sites. Journal of Medicinal Chemistry May 2016, 12:59(9):4152-70. PMC4707132. Online access to the article.
  3. Roy, A; Patwardhan, B; Chaguturu, R. Reigniting pharmaceutical innovation through holistic drug targeting. Drug Discovery World Summer 2016, pp.45-55. Online access to the article.
  4. Meneely, KM; Ronnebaum, TA; Riley, AP; Prisinzano, TE; Lamb, AL. Holo Structure and Steady State Kinetics of the Thiazolinyl Imine Reductases for Siderophore Biosynthesis. Biochemistry Sept. 27 2016, pp.5423-33. PMC5046821. Online access to the article.
  5. Kim, S; Patel, DS; Park, S; Slusky, J; Klauda, JB; Widmalm, G; Im, W. Bilayer Properties of Lipid A from Various Gram-Negative Bacteria. Biophysical Journal Oct 2016, 18:111(8):1750-60. PMC5071556. Online access to the article.
  6. Polireddy, K; Dong, R; McDonald, PR; Wang, T; Luke, B; Chen, P; Broward, M; Roy, A; Chen, Q. Targeting Epithelial-Mesenchymal Transition for Identification of Inhibitors for Pancreatic Cancer Cell Invasion and Tumor Spheres Formation. PLoS one Oct 2016, 20:11(10):e0164811. PMC5072586. Online access to the article.
  7. Parrales, A; Ranjan, A; Iyer, SV; Padhye, S; Weir, SJ; Roy, A; Iwakuma, T. DNAJA1 controls the fate of misfolded mutant p53 through the mevalonate pathway. Nature Cell Biology Nov 2016, 18(11):1233-1243. PMC5340314. Online access to the article.
  8. Salim, NN; Ganaie, SS; Roy, A; Jeeva, S; Mir, MA. Targeting a Novel RNA-Protein Interaction for Therapeutic Intervention of Hantavirus Disease. Journal of Biological Chemistry Nov 2016, 18:291(47):24702-14. PMC5114419. Online access to the article.
  9. Slusky, JS. Outer membrane protein design. Current Opinion in Structural Biology Nov 2016, 25:45:45-52. PMC5445000. Online access to the article.
  10. Phaniraj, S; Gao, Z; Rane, D; Peterson, BR. Hydrophobic resorufamine derivatives: potent and selective red fluorescent probes of the endoplasmic reticulum of mammalian cells. Dyes and pigments : an international journal Dec 2016, 135:127-33. PMC5066811. Online access to the article.
  11. Budiardjo, SJ; Licknack, TJ; Cory, MB; Kapros, D; Roy, A; Lovell, S; Douglas, J; Karanicolas, J. Full and Partial Agonism of a Designed Enzyme Switch. ACS Synthetic Biology Dec 2016, 16:5(12):1475-84. PMC5161622. Online access to the article.
  12. Lee, MM; Peterson, BR. Quantification of Small Molecule-Protein Interactions using FRET between Tryptophan and the Pacific Blue Fluorophore. ACS Omega Dec 2016, 31:1(6):1266-76. PMC5204206. Online access to the article.

2015

  1. Sullivan, BP; El-Gendy, N; Kuehl, C; Berkland, C. Pulmonary Delivery of Vancomycin Dry Powder Aerosol to Intubated Rabbits. Molecular Pharmaceutics Aug 2015, 3:12(8):2665-74. PMC4943339. Online access to the article

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